PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029807m
Common NameCICLE_v10029807mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 363aa    MW: 40057 Da    PI: 8.8019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029807mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07190212123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  Ciclev10029807m 190 HYCQVCGKGFKRDANLRMHMRAH 212
                      68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.46E-6188215No hitNo description
PROSITE profilePS5015712.653190217IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-7190216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034190212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SMARTSM0035574247280IPR015880Zinc finger, C2H2-like
SMARTSM0035522285307IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSQAVVSSSG PASNPSNVSS LLYSVSFLKQ KVHQLQSVIT ILVSQDHHKP TESTSIALAN  60
MRSLVQEIIL TASSLMVTCQ QMSPPPASTS GTNNITTNEI SQLDPNNNQE ISSGLQGCYN  120
FSEAFDTWYG DHNDLVTTDD DNNRGMHSNN VSNYINNANI TIAENGESFS ETNGDIIEVD  180
AVDLLAKYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTSA ALTNPLKKNG SSMGKNNEST  240
IKIVRKYSCP QEGCRWNKKH AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD  300
LRTHEKHCGD SKWQCSCGTT FSRKDKLMGH VALFVGHTPA VNVNSTNTYG QKGASTGTNV  360
IR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424436.10.0hypothetical protein CICLE_v10029807mg
TrEMBLV4SKX30.0V4SKX3_9R
STRINGPOPTR_0004s22670.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-107C2H2 family protein